Just to share update, I finally got my issue fixed.!!!
It was matter of few clicks here & ther done by the same higher offices who 5 mins before not ready to listen and was saying "I don't have system with me to check, I cannot do anything" and was telling us to go Oniaza immigration and check or come after Eid".
later my Arabic speaking friend said lot of things then he took my QID and did some checks and after and hour I got my visa.